{ "_id": "6a1f20f3b401979e73420503", "Package": "ldsep", "Title": "Linkage Disequilibrium Shrinkage Estimation for Polyploids", "Version": "2.1.6", "Authors@R": "person(given = \"David\",\nfamily = \"Gerard\",\nrole = c(\"aut\", \"cre\"),\nemail = \"gerard.1787@gmail.com\",\ncomment = c(ORCID = \"0000-0001-9450-5023\"))", "Description": "Estimate haplotypic or composite pairwise linkage\ndisequilibrium (LD) in polyploids, using either genotypes or\ngenotype likelihoods. Support is provided to estimate the\npopular measures of LD: the LD coefficient D, the standardized\nLD coefficient D', and the Pearson correlation coefficient r.\nAll estimates are returned with corresponding standard errors.\nThese estimates and standard errors can then be used for\nshrinkage estimation. The main functions are ldfast(), ldest(),\nmldest(), sldest(), plot.lddf(), format_lddf(), and ldshrink().\nDetails of the methods are available in Gerard (2021a)\n and Gerard (2021b)\n.", "License": "GPL (>= 3)", "BugReports": "https://github.com/dcgerard/ldsep/issues", "URL": "https://dcgerard.github.io/ldsep/", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Repository": "https://dcgerard.r-universe.dev", "Date/Publication": "2025-09-18 16:41:12 UTC", "RemoteUrl": "https://github.com/dcgerard/ldsep", "RemoteRef": "HEAD", "RemoteSha": "14b2be97c818bb6011cab98cf0b01000ed33bb41", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-16 07:41:47 UTC", "User": "root" }, "Author": "David Gerard [aut, cre] (ORCID:\n)", "Maintainer": "David Gerard ", "MD5sum": "d1102ac93db2e75369edc23bcc93511a", "_user": "dcgerard", "_type": "src", "_file": "ldsep_2.1.6.tar.gz", "_fileid": 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