Package: hwep
Title: Hardy-Weinberg Equilibrium in Polyploids
Version: 2.0.3
Authors@R: 
    c(person(given = "David",
             family = "Gerard",
             role = c("aut", "cre"),
             email = "gerard.1787@gmail.com",
             comment = c(ORCID = "0000-0001-9450-5023")),
      person(given = "NSF DBI 2132247",
             role = "fnd",
             comment = "https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247")
     )
Description: Inference concerning equilibrium and random mating in
        autopolyploids. Methods are available to test for equilibrium
        and random mating at any even ploidy level (>2) in the presence
        of double reduction at biallelic loci. For autopolyploid
        populations in equilibrium, methods are available to estimate
        the degree of double reduction. We also provide functions to
        calculate genotype frequencies at equilibrium, or after one or
        several rounds of random mating, given rates of double
        reduction. The main function is hwefit(). This material is
        based upon work supported by the National Science Foundation
        under Grant No. 2132247. The opinions, findings, and
        conclusions or recommendations expressed are those of the
        author and do not necessarily reflect the views of the National
        Science Foundation. For details of these methods, see Gerard
        (2023a) <doi:10.1111/biom.13722> and Gerard (2023b)
        <doi:10.1111/1755-0998.13856>.
License: GPL (>= 3)
BugReports: https://github.com/dcgerard/hwep/issues
URL: https://dcgerard.github.io/hwep/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0), covr, knitr, rmarkdown, ggplot2
Config/testthat/edition: 3
Imports: bridgesampling, doFuture, doRNG, foreach, future, iterators,
        methods, pracma, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1),
        rstan (>= 2.18.1), rstantools (>= 2.2.0), tensr, updog
VignetteBuilder: knitr
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
Biarch: true
Depends: R (>= 3.4.0)
SystemRequirements: GNU make
Config/pak/sysreqs: make libicu-dev
Repository: https://dcgerard.r-universe.dev
Date/Publication: 2025-07-23 15:01:01 UTC
RemoteUrl: https://github.com/dcgerard/hwep
RemoteRef: HEAD
RemoteSha: 5e77ec3264b122b974ec57052039ed76a5cf9683
NeedsCompilation: yes
Packaged: 2026-07-03 09:03:06 UTC; root
Author: David Gerard [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9450-5023>),
  NSF DBI 2132247 [fnd]
    (https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247)
Maintainer: David Gerard <gerard.1787@gmail.com>