NEWS
hwep 2.0.3
- Updates citations to published version of Gerard (2023a) and in press
version of Gerard (2023b).
hwep 2.0.2 (2023-05-16)
- Add more options to
simgl() to increase the flexibility of the simulations.
- Added an allopolyploid prior to the random mating tests.
hwep 2.0.1 (2023-03-15)
- Updates package for compatibility with newer version of rstan.
hwep 2.0.0 (2022-08-16)
- Added
rmbayes() and associated functions for Bayes tests for random mating.
- Multiple restarts in EM algorithm for
rmlike() to fix issues with local convergence.
- Added
rmbayesgl() for Bayes test of random mating when using genotype likelihoods to account for genotype uncertainty. This uses the {rstan} package as a backend.
- Added
glsim() for genotype likelihood simulation.
qqpvalue() will now allow the user to return a ggplot object.- Added
menbayesgl() for testing Mendelian segregation frequencies from S1 and F1 populations.
hwep 0.0.2 (2022-05-02)
- New function,
qqpvalue(): A QQ-plot function for $p$-values on the $-\log_{10}$-scale.
- New function,
ts_bands(): Calculates simultaneous confidence bands for uniform quantiles.
- New function,
f1dr(): Estimates the double reduction rate from an F1 population via maximum likelihood.
- Edit aggregation strategy so that it works a little better to mitigate the effects of the asymptotic approximation.
hwep 0.0.1 (2021-09-28)