Package: segtest
Title: Tests for Segregation Distortion in Polyploids
Version: 2.0.2
Authors@R: 
    c(person(given = "David", 
             family = "Gerard",
             email = "gerard.1787@gmail.com", 
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0001-9450-5023")),
      person(given = "Mira", 
             family = "Thakkar", 
             email = "chrtmira@gmail.com", 
             role = c("aut")),
      person(given = "Guilherme da Silva",
             family = "Pereira",
             email = "g.pereira@ufv.br",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-7106-8630")),
      person(given = "NSF DBI 2132247",
             role = "fnd",
             comment = "https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247")
     )
Description: Provides tests for segregation distortion in F1 polyploid
        populations under different assumptions of meiosis. These tests
        can account for double reduction, partial preferential pairing,
        and genotype uncertainty through the use of genotype
        likelihoods. Parallelization support is provided. Details of
        these methods are described in Gerard et al. (2025a)
        <doi:10.1007/s00122-025-04816-z> and Gerard et al. (2025b)
        <doi:10.1093/g3journal/jkaf212>. Part of this material is based
        upon work supported by the National Science Foundation under
        Grant No. 2132247.  The opinions, findings, and conclusions or
        recommendations expressed are those of the author and do not
        necessarily reflect the views of the National Science
        Foundation.
License: GPL (>= 3)
BugReports: https://github.com/dcgerard/segtest/issues
URL: https://dcgerard.github.io/segtest/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Biarch: true
Depends: R (>= 3.5)
Imports: doFuture, doRNG, foreach, future, iterators, minqa, nloptr,
        Rcpp, updog
Suggests: knitr, polymapR, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
LazyData: true
Config/pak/sysreqs: cmake make libicu-dev
Repository: https://dcgerard.r-universe.dev
Date/Publication: 2025-11-15 00:13:22 UTC
RemoteUrl: https://github.com/dcgerard/segtest
RemoteRef: HEAD
RemoteSha: 42f1978b83d7c9ba80dbfb027d8f3b99083a075d
NeedsCompilation: yes
Packaged: 2026-07-04 06:16:15 UTC; root
Author: David Gerard [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9450-5023>),
  Mira Thakkar [aut],
  Guilherme da Silva Pereira [ctb] (ORCID:
    <https://orcid.org/0000-0002-7106-8630>),
  NSF DBI 2132247 [fnd]
    (https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247)
Maintainer: David Gerard <gerard.1787@gmail.com>