Package: seqgendiff
Type: Package
Title: RNA-Seq Generation/Modification for Simulation
Version: 1.2.4
Authors@R: person("David", "Gerard", email = "gerard.1787@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9450-5023"))
Description: Generates/modifies RNA-seq data for use in simulations. We
        provide a suite of functions that will add a known amount of
        signal to a real RNA-seq dataset. The advantage of using this
        approach over simulating under a theoretical distribution is
        that common/annoying aspects of the data are more preserved,
        giving a more realistic evaluation of your method. The main
        functions are select_counts(), thin_diff(), thin_lib(),
        thin_gene(), thin_2group(), thin_all(), and effective_cor().
        See Gerard (2020) <doi:10.1186/s12859-020-3450-9> for details
        on the implemented methods.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/dcgerard/seqgendiff
BugReports: https://github.com/dcgerard/seqgendiff/issues
RoxygenNote: 7.3.1
Suggests: covr, testthat (>= 2.1.0), SummarizedExperiment, DESeq2,
        knitr, rmarkdown, airway, limma, qvalue, edgeR
Imports: assertthat, irlba, sva, pdist, matchingR, clue
VignetteBuilder: knitr
Config/pak/sysreqs: libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://dcgerard.r-universe.dev
Date/Publication: 2024-05-15 09:43:42 UTC
RemoteUrl: https://github.com/dcgerard/seqgendiff
RemoteRef: HEAD
RemoteSha: 9629ad951b355c23e5e9a11cff59f6b90d65b188
NeedsCompilation: no
Packaged: 2026-06-06 06:59:35 UTC; root
Author: David Gerard [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9450-5023>)
Maintainer: David Gerard <gerard.1787@gmail.com>