Genotyping Many SNPs with multidog()5 months ago
Abstract | Fit multidog() | multidog() Output | References
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Introduction to segtest Version 1.09 months ago
Offspring genotype frequencies | When the null is true | When the alternative is true | References
Introduction to segtest Version 2.09 months ago
Gamete genotype frequencies | Simulating data | Testing for segregation distortion | References
Parallel Testing9 months ago
Introduction | Analysis | multi_lrt() | References
LD Estimation Pipeline from VCF10 months ago
Summary | Analysis | Extract data from a VCF file using VariantAnnotation | Genotype individuals using updog | Extracting Log-likelihoods using fitPoly | Estimate LD using ldsep | References
Fast LD Estimation10 months ago
Abstract | Analysis | References
Equivariant Estimation of Kronecker Structured Covariance Matrices12 months ago
Abstract. | Comparison of Methods. | Posterior Summaries | Demonstrate Equivariance | References
Likelihood Inference in Kronecker Structured Covariance Models12 months ago
Abstract | Maximum Likelihood Estimation | Likelihood Ratio Testing | References
Introduction to the hwep package12 months ago
Introduction | The double reduction parameter. | Segregation probabilities | Equilibrium genotype frequencies | Testing for equilibrium and random mating | References
Applying Different Thinning Functions4 years ago
Abstract | Generate Data | Subsetting | Thinning Library Size | Total Thinning | General Thinning | Correlation with Surrogate Variables | Estimate Actual Correlation | Special Case of Two-group Model | References
Simulate RNA-seq Data from Real Data4 years ago
Example Use of Updog6 years ago
What's Updog? | Example from an S1 Population | Fit updog | Analyze Output | Filtering SNPs | References
Oracle Calculations6 years ago
Abstract | Controlling Misclassification Error | Visualizing the Joint Distribution | References
Simulate Next-Generation Sequencing Data6 years ago
Abstract | Analysis | F1 Population | HWE Population | References
